Basic Information
Locus ID:
gene-LOC103703151
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1605743 | 1606951 | + | gene-LOC103703151 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.31 | 44,739.53 Da | 51.69 | 99.97 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 1 | 35 | 1.54723E-15 | - |
| Pfam | PF04564 | U-box domain | 1 | 59 | 4.0E-13 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 63 | 2.56E-19 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 89 | 377 | 9.22E-11 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 77 | 395 | 8.2E-14 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 62 | 1.7E-20 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 1 | 55 | 1.7E-20 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 62 | 32.925461 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_008784119.3 | E3 ubiquitin-protein ligase PUB23-like [Phoenix dactylifera] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BRV8 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103703151 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology