Basic Information
Locus ID:
gene-LOC103703056
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 19399461 | 19400332 | + | gene-LOC103703056 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 19,010.49 Da | 58.95 | 79.54 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 109 | 148 | 3.40927E-15 | - |
| Pfam | PF13639 | Ring finger domain | 109 | 148 | 7.6E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 109 | 155 | 6.42E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 155 | 2.3E-17 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 109 | 149 | 9.671455 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008783976.1 | E3 ubiquitin-protein ligase ATL41 [Phoenix dactylifera] | 0 |
| Q9SLC3 | E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BRV1 | E3 ubiquitin-protein ligase ATL41 OS=Phoenix dactylifera OX=42345 GN=LOC103703056 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_03G013410, COCNU_03G013420 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703056 |