Basic Information
Locus ID:
gene-LOC103702905
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Short Name:
NTMC2T4.1
Description:
ntmc2t4,ntmc2type4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000392F | 156741 | 187102 | - | gene-LOC103702905 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 54,150.67 Da | 26.17 | 106.86 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 251 | 351 | 1.84516E-28 | - |
| Pfam | PF00168 | C2 domain | 249 | 346 | 2.0E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 57 | 233 | 2.4E-17 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 247 | 378 | 1.26E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 243 | 405 | 1.6E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 250 | 348 | 5.1E-20 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 52 | 234 | 23.053442 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 232 | 351 | 20.55582 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 266 | 278 | 4.9E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 291 | 304 | 4.9E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 313 | 321 | 4.9E-5 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 506 | - | - |
| Coils | Coil | Coil | 384 | 404 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_038974602.1 | synaptotagmin-5-like [Phoenix dactylifera] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8ZMN9 | synaptotagmin-5-like OS=Phoenix dactylifera OX=42345 GN=LOC103702905 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology