Basic Information
Locus ID:
gene-LOC103702657
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000528F | 235532 | 248547 | - | gene-LOC103702657 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 48,195.46 Da | 67.31 | 86.31 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 235 | 278 | 1.02321E-23 | - |
| CDD | cd02123 | PA_C_RZF_like | 16 | 162 | 4.00144E-53 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 235 | 278 | 3.0E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 66 | 144 | 5.9E-11 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 83 | 151 | 2.49E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 214 | 284 | 7.83E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 283 | 2.2E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 25 | 157 | 6.2E-28 | - |
| SMART | SM00184 | ring_2 | 236 | 277 | 3.2E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 236 | 278 | 12.297489 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 343 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_008783392.2 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X1 [Phoenix dactylifera] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7BQP1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103702657 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology