Basic Information
Locus ID:
gene-LOC103702515
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 16314821 | 16326687 | + | gene-LOC103702515 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 43,709.63 Da | 51.07 | 72.65 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 241 | 369 | 2.86623E-69 | - |
| CDD | cd16571 | RING-HC_SIAHs | 125 | 163 | 4.11233E-15 | - |
| Pfam | PF03145 | Seven in absentia protein family | 169 | 368 | 1.3E-79 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 121 | 167 | 2.24E-5 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 180 | 372 | 2.94E-48 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 238 | 368 | 6.1E-39 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 121 | 169 | 3.8E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 175 | 235 | 5.9E-17 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 180 | 240 | 13.963663 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 127 | 163 | 9.464913 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_008783203.2 | E3 ubiquitin-protein ligase SINAT5 [Phoenix dactylifera] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BQG5 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103702515 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology