Basic Information
Locus ID:
gene-LOC103702318
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 4045619 | 4058675 | + | gene-LOC103702318 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 83,356.10 Da | 41.16 | 92.54 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 50 | 349 | 2.89069E-172 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 366 | 666 | 1.6214E-158 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 371 | 662 | 2.0E-37 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 365 | 666 | 1.96E-44 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 48 | 349 | 1.96E-41 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 364 | 666 | 1.8E-48 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 48 | 350 | 1.2E-32 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 50 | 350 | 32.096382 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 366 | 667 | 33.769123 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 745 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_008782908.2 | glycerophosphodiester phosphodiesterase GDPDL3-like [Phoenix dactylifera] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A8B7BPS9 | glycerophosphodiester phosphodiesterase OS=Phoenix dactylifera OX=42345 GN=LOC103702318 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology