Basic Information
Locus ID:
gene-LOC103702254
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Nucleolysin TIAR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 4140279 | 4149273 | + | gene-LOC103702254 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 45,947.94 Da | 45.83 | 72.25 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 58 | 128 | 1.84861E-36 | - |
| CDD | cd12619 | RRM2_PUB1 | 142 | 216 | 1.26442E-52 | - |
| CDD | cd12354 | RRM3_TIA1_like | 262 | 334 | 1.30711E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 143 | 213 | 1.6E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 264 | 330 | 1.7E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 58 | 124 | 2.4E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 255 | 344 | 8.28E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 54 | 221 | 6.79E-44 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 137 | 1.3E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 138 | 234 | 4.0E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 242 | 340 | 8.2E-23 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 142 | 215 | 1.3E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 57 | 126 | 2.3E-17 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 263 | 332 | 23.0 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 263 | 332 | 5.9E-17 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 142 | 215 | 0.0021 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 262 | 336 | 15.817916 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 56 | 130 | 15.493864 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 141 | 219 | 17.028851 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 258 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_008782813.1 | oligouridylate-binding protein 1B-like isoform X1 [Phoenix dactylifera] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BPP7 | oligouridylate-binding protein 1B-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103702254 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology