Basic Information
Locus ID:
gene-LOC103702179
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 7086292 | 7109273 | - | gene-LOC103702179 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 103,166.82 Da | 45.46 | 85.89 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 2 | 208 | 2.05605E-88 | - |
| CDD | cd18794 | SF2_C_RecQ | 209 | 344 | 1.7152E-53 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 174 | 1.9E-19 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 347 | 407 | 8.6E-12 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 559 | 624 | 4.2E-15 | IPR002121 |
| Pfam | PF14493 | Helix-turn-helix domain | 676 | 769 | 2.5E-19 | IPR029491 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 233 | 334 | 1.4E-20 | IPR001650 |
| Pfam | PF09382 | RQC domain | 412 | 513 | 1.4E-22 | IPR018982 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 406 | 518 | 3.26E-24 | IPR036390 |
| SUPERFAMILY | SSF47819 | HRDC-like | 552 | 633 | 1.44E-16 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 23 | 347 | 8.9E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 207 | 7.8E-69 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 411 | 533 | 5.5E-32 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 553 | 635 | 3.8E-17 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 209 | 410 | 5.4E-58 | IPR027417 |
| SMART | SM00956 | RQC_2 | 415 | 519 | 6.7E-26 | IPR018982 |
| SMART | SM00490 | helicmild6 | 254 | 335 | 1.5E-29 | IPR001650 |
| SMART | SM00487 | ultradead3 | 10 | 204 | 2.4E-30 | IPR014001 |
| SMART | SM00341 | hrdc7 | 554 | 634 | 5.3E-7 | IPR002121 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 4 | 467 | 6.6E-147 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 24.026993 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 225 | 380 | 20.348225 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 554 | 634 | 19.420525 | IPR002121 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_038980384.1 | probable ATP-dependent DNA helicase RecQ isoform X1 [Phoenix dactylifera] | 0 |
| Q9CL21 | ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain Pm70) OX=272843 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A8B9AB04 | ATP-dependent DNA helicase OS=Phoenix dactylifera OX=42345 GN=LOC103702179 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology