Basic Information
Locus ID:
gene-LOC103701794
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold001748F | 32650 | 41093 | - | gene-LOC103701794 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 45,003.83 Da | 42.87 | 90.92 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 183 | 205 | 0.039 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 115 | 382 | 2.75E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 74 | 388 | 1.1E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 209 | 248 | 4.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 339 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 340 | 381 | 0.67 | IPR001680 |
| SMART | SM00320 | WD40_4 | 168 | 206 | 0.14 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 59 | - | - |
| Coils | Coil | Coil | 32 | 59 | - | - |
| Coils | Coil | Coil | 158 | 178 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_008782191.2 | SEC12-like protein 2 [Phoenix dactylifera] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A8B7BNJ0 | SEC12-like protein 2 OS=Phoenix dactylifera OX=42345 GN=LOC103701794 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology