Basic Information
Locus ID:
gene-LOC103701658
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 4094433 | 4133591 | - | gene-LOC103701658 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 95,803.85 Da | 49.58 | 75.47 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 24 | 123 | 7.96178E-12 | - |
| CDD | cd00159 | RhoGAP | 186 | 323 | 1.01663E-29 | - |
| Pfam | PF00620 | RhoGAP domain | 185 | 328 | 1.1E-29 | IPR000198 |
| Pfam | PF00169 | PH domain | 23 | 127 | 1.6E-12 | IPR001849 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 614 | 694 | 6.6E-22 | IPR025757 |
| SUPERFAMILY | SSF50729 | PH domain-like | 18 | 134 | 1.4E-17 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 186 | 377 | 9.81E-33 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 180 | 383 | 4.1E-39 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 12 | 129 | 1.2E-17 | IPR011993 |
| SMART | SM00324 | RhoGAP_3 | 181 | 371 | 4.6E-21 | IPR000198 |
| SMART | SM00233 | PH_update | 22 | 130 | 3.2E-15 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 175 | 374 | 26.916885 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 21 | 128 | 15.3672 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 492 | - | - |
| Coils | Coil | Coil | 817 | 837 | - | - |
| Coils | Coil | Coil | 604 | 638 | - | - |
| Coils | Coil | Coil | 663 | 697 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_008782026.1 | rho GTPase-activating protein 7-like isoform X1 [Phoenix dactylifera] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7BNA3 | rho GTPase-activating protein 7-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103701658 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology