Basic Information
Locus ID:
gene-LOC103701426
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 16940645 | 16945314 | - | gene-LOC103701426 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 69,572.91 Da | 40.88 | 87.54 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 191 | 233 | 4.3592E-7 | IPR018392 |
| Pfam | PF01476 | LysM domain | 191 | 234 | 9.3E-8 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 362 | 610 | 7.7E-37 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 329 | 613 | 5.62E-64 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 190 | 234 | 2.88E-6 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 316 | 409 | 1.7E-14 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 410 | 622 | 1.9E-51 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 186 | 243 | 6.1E-9 | IPR036779 |
| SMART | SM00257 | LysM_2 | 190 | 234 | 3.0E-4 | IPR018392 |
| SMART | SM00257 | LysM_2 | 124 | 170 | 0.3 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 335 | 622 | 32.711037 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 189 | 233 | 11.662034 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 265 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_038984149.1 | protein LYK5 [Phoenix dactylifera] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B9ALH3 | protein LYK5 OS=Phoenix dactylifera OX=42345 GN=LOC103701426 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology