Basic Information
Locus ID:
gene-LOC103701131
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
protein polyubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 8474409 | 8475406 | + | gene-LOC103701131 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.15 | 26,929.02 Da | 51.28 | 85.41 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 190 | 233 | 3.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 190 | 238 | 7.07E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 139 | 237 | 8.1E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 191 | 232 | 8.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 191 | 233 | 12.25323 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_008781328.2 | uncharacterized protein LOC103701131 [Phoenix dactylifera] | 0 |
| Q96EX2 | E3 ubiquitin-protein ligase RNFT2 OS=Homo sapiens OX=9606 GN=RNFT2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B7BM36 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103701131 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_03G000160, COCNU_08G004670 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701131 |