Basic Information
Locus ID:
gene-LOC103701064
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
High mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000254F | 689807 | 695235 | - | gene-LOC103701064 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 40,829.06 Da | 59.59 | 67.93 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 265 | 329 | 1.12283E-17 | - |
| CDD | cd16872 | ARID_HMGB9-like | 45 | 130 | 1.41293E-47 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 46 | 130 | 2.8E-21 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 265 | 332 | 5.1E-12 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 256 | 335 | 3.93E-18 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 37 | 143 | 9.29E-33 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 248 | 347 | 7.3E-18 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 26 | 143 | 1.5E-30 | IPR036431 |
| SMART | SM01014 | ARID_2 | 40 | 130 | 1.8E-32 | - |
| SMART | SM00398 | hmgende2 | 264 | 333 | 9.6E-15 | IPR009071 |
| SMART | SM00501 | bright_3 | 44 | 135 | 1.9E-34 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 265 | 332 | 15.356516 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 43 | 134 | 27.877272 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 183 | - | - |
| Coils | Coil | Coil | 321 | 348 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_008781236.1 | high mobility group B protein 9 [Phoenix dactylifera] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BLX2 | high mobility group B protein 9 OS=Phoenix dactylifera OX=42345 GN=LOC103701064 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology