Basic Information
Locus ID:
gene-LOC103701031
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6214066 | 6216695 | - | gene-LOC103701031 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 50,627.76 Da | 51.92 | 78.74 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 109 | 422 | 1.4E-84 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 70 | 467 | 1.91E-125 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 59 | 463 | 1.7E-118 | IPR012334 |
| SMART | SM00710 | pbh1 | 236 | 262 | 32.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 286 | 306 | 2500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 316 | 337 | 33.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 263 | 284 | 830.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 293 | 306 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_008781188.2 | polygalacturonase At1g48100-like [Phoenix dactylifera] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7BLU9 | polygalacturonase At1g48100-like OS=Phoenix dactylifera OX=42345 GN=LOC103701031 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology