Basic Information
Locus ID:
gene-LOC103700883
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000388F | 427798 | 433939 | + | gene-LOC103700883 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 32,868.57 Da | 42.57 | 83.01 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 252 | 295 | 1.61821E-19 | - |
| CDD | cd02123 | PA_C_RZF_like | 37 | 179 | 3.61037E-40 | IPR044744 |
| Pfam | PF02225 | PA domain | 102 | 164 | 1.4E-8 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 252 | 295 | 3.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 298 | 2.78E-18 | - |
| SUPERFAMILY | SSF52025 | PA domain | 102 | 153 | 1.96E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 213 | 301 | 6.0E-20 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 38 | 177 | 6.3E-22 | - |
| SMART | SM00184 | ring_2 | 253 | 294 | 1.0E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 253 | 295 | 12.341748 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_008781001.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 isoform X1 [Phoenix dactylifera] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BLG6 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103700883 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology