Basic Information
Locus ID:
gene-LOC103700874
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Short Name:
CMPG1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 8174347 | 8175902 | + | gene-LOC103700874 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 48,633.96 Da | 47.01 | 102.80 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 36 | 76 | 2.07101E-24 | - |
| Pfam | PF04564 | U-box domain | 32 | 103 | 2.5E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 30 | 107 | 7.95E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 185 | 424 | 4.53E-20 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 109 | 1.8E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 121 | 423 | 2.8E-19 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 35 | 98 | 6.3E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 31 | 105 | 40.62122 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_008780992.3 | U-box domain-containing protein 21-like [Phoenix dactylifera] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7BLG8 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103700874 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology