Basic Information
Locus ID:
gene-LOC103700149
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000343F | 546822 | 553461 | + | gene-LOC103700149 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 65,868.39 Da | 48.69 | 76.78 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 385 | 419 | 2.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 11 | 516 | 2.04E-36 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 226 | 576 | 4.4E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 183 | 7.1E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 337 | 377 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 380 | 419 | 9.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 292 | 334 | 70.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 511 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 46 | 86 | 0.66 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 387 | 428 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 64 | 95 | 9.572741 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 387 | 422 | 10.601049 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 406 | 420 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 606 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 576 | 606 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 212 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_038974317.1 | protein TPR1-like isoform X1 [Phoenix dactylifera] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8ZLX7 | protein TPR1-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103700149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg11622 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000011711, gene:ENSEOMG00000016261 ... |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30099560, pistato.v30099680, pistato.v30099790 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G007850 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700149 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.1301.V1.1, AsparagusV1_01.131.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G19082 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028234 |
| Poaceae | Echinochloa crus-galli | 1 | CH08.491 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G054200 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr20G011510 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g25450 |
| Salicaceae | Populus euphratica | 1 | populus_peu12947 |
| Solanaceae | Solanum chilense | 3 | SOLCI001994800, SOLCI005587600, SOLCI005587700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107013672, gene-LOC107014302 |