Basic Information
Locus ID:
gene-LOC103699530
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 8555735 | 8565834 | + | gene-LOC103699530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 53,641.12 Da | 46.61 | 85.69 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 179 | 253 | 5.4E-12 | IPR020683 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 52 | 103 | 1.2E-11 | - |
| Pfam | PF00023 | Ankyrin repeat | 118 | 138 | 0.0015 | IPR002110 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 276 | 8.76E-53 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 320 | 377 | 2.05E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 11 | 143 | 1.1E-32 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 158 | 285 | 1.9E-26 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 305 | 385 | 1.0E-5 | IPR013083 |
| SMART | SM00248 | ANK_2a | 179 | 208 | 2.2E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 7.1E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.012 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 4.0E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 0.96 | IPR002110 |
| SMART | SM00184 | ring_2 | 321 | 370 | 0.0052 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 8.667035 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 371 | 9.568184 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 10.975266 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.19691 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.75132 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 179 | 211 | 12.23535 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 11.75457 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 9.728291 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 9.75132 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 179 | 207 | 11.718143 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.301834 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 4.2E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 180 | 195 | 4.2E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_008779775.1 | probable E3 ubiquitin-protein ligase XBOS32 isoform X1 [Phoenix dactylifera] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8B7BKP1 | probable E3 ubiquitin-protein ligase XBOS32 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103699530 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology