Basic Information
Locus ID:
gene-LOC103698716
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Nucleolysin TIAR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 8781090 | 8790690 | - | gene-LOC103698716 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 45,937.02 Da | 51.13 | 75.72 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 263 | 337 | 4.86877E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 143 | 217 | 2.04518E-52 | - |
| CDD | cd12352 | RRM1_TIA1_like | 59 | 129 | 3.90469E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 59 | 125 | 2.8E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 144 | 214 | 1.3E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 265 | 331 | 1.7E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 46 | 135 | 2.55E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 253 | 341 | 3.94E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 136 | 236 | 5.78E-27 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 140 | 241 | 2.9E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 139 | 7.9E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 243 | 341 | 1.3E-21 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 143 | 216 | 0.023 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 58 | 127 | 8.0E-16 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 264 | 333 | 5.8 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 143 | 216 | 9.3E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 264 | 333 | 1.2E-15 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 57 | 131 | 15.033368 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 263 | 337 | 15.527974 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 142 | 220 | 17.267626 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_038990278.1 | oligouridylate-binding protein 1-like [Phoenix dactylifera] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9B216 | oligouridylate-binding protein 1-like OS=Phoenix dactylifera OX=42345 GN=LOC103698716 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology