Basic Information
Locus ID:
gene-LOC103698444
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3862934 | 3889781 | + | gene-LOC103698444 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 112,192.12 Da | 35.78 | 80.20 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 36 | 312 | 3.93024E-178 | - |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 598 | 805 | 1.2E-48 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 37 | 348 | 1.7E-92 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 891 | 996 | 1.6E-12 | IPR041147 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 353 | 442 | 1.3E-19 | IPR015341 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 453 | 999 | 3.61E-145 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 352 | 447 | 1.54E-27 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 25 | 350 | 6.67E-111 | IPR011330 |
| Gene3D | G3DSA:2.60.40.1180 | - | 459 | 570 | 2.6E-27 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 592 | 857 | 1.8E-95 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 877 | 999 | 3.5E-35 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 36 | 316 | 7.0E-120 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 317 | 394 | 7.9E-29 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 395 | 451 | 2.8E-20 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 353 | 427 | 1.7E-21 | IPR015341 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 18 | 5.0 | - |
| Coils | Coil | Coil | 924 | 958 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_038973726.1 | alpha-mannosidase-like isoform X1 [Phoenix dactylifera] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8ZHT4 | Alpha-mannosidase OS=Phoenix dactylifera OX=42345 GN=LOC103698444 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology