Basic Information
Locus ID:
gene-LOC103698051
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 3964767 | 3980129 | - | gene-LOC103698051 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 88,542.71 Da | 38.84 | 84.02 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 10 | 246 | 2.58894E-63 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 10 | 45 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 135 | 172 | 3.7E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 176 | 214 | 1.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 94 | 130 | 3.8E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 54 | 88 | 2.1E-5 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 653 | 810 | 1.2E-50 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 295 | 3.43E-71 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 145 | 357 | 2.0E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 144 | 5.6E-37 | IPR015943 |
| SMART | SM00320 | WD40_4 | 175 | 214 | 1.5E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 49 | 88 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 1.6E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 5.3E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 255 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 6 | 46 | 0.0047 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 181 | 17.827036 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 177 | 13.791033 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 182 | 223 | 15.387508 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 139 | 15.821944 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 132 | 12.103769 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 56 | 90 | 11.629227 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 182 | 217 | 12.209223 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 13 | 55 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 56 | 97 | 15.654854 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 159 | 173 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 201 | 215 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 117 | 131 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 75 | 89 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 201 | 215 | 9.2E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 173 | 9.2E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 117 | 131 | 9.2E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 2 | 813 | 20.461054 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 606 | 620 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 620 | - | - |
| Coils | Coil | Coil | 658 | 678 | - | - |
| Coils | Coil | Coil | 799 | 817 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_008778233.2 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like isoform X1 [Phoenix dactylifera] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BJ82 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Phoenix dactylifera OX=42345 GN=LOC103698051 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology