Basic Information
Locus ID:
gene-LOC103697941
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
High mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000584F | 185836 | 203936 | + | gene-LOC103697941 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 54,275.82 Da | 51.22 | 60.31 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 287 | 351 | 1.2086E-20 | - |
| CDD | cd16872 | ARID_HMGB9-like | 71 | 156 | 1.17613E-48 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 287 | 354 | 2.5E-15 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 73 | 156 | 8.3E-17 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 278 | 358 | 1.3E-20 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 67 | 166 | 2.62E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 61 | 165 | 5.7E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 271 | 365 | 1.4E-21 | IPR036910 |
| SMART | SM00501 | bright_3 | 70 | 161 | 9.0E-30 | IPR001606 |
| SMART | SM01014 | ARID_2 | 66 | 156 | 1.7E-28 | - |
| SMART | SM00398 | hmgende2 | 286 | 355 | 2.9E-18 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 287 | 354 | 14.987191 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 69 | 160 | 25.809639 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 49 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_038975541.1 | high mobility group B protein 15-like isoform X1 [Phoenix dactylifera] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B8ZMU7 | high mobility group B protein 15-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103697941 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology