Basic Information
Locus ID:
gene-LOC103697840
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 14803393 | 14821662 | - | gene-LOC103697840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.10 | 168,041.98 Da | 39.81 | 107.48 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 310 | 597 | 2.66935E-105 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 942 | 1236 | 3.8471E-95 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1259 | 1479 | 3.85216E-116 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 623 | 823 | 1.62904E-105 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 944 | 1186 | 3.9E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1278 | 1426 | 2.3E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 312 | 577 | 1.3E-26 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 641 | 775 | 1.3E-19 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1252 | 1491 | 5.23E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 300 | 605 | 8.5E-37 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 618 | 845 | 5.93E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 941 | 1244 | 3.14E-51 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 617 | 851 | 8.9E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1245 | 1496 | 3.3E-82 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 903 | 1242 | 1.6E-61 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 280 | 606 | 3.4E-52 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1287 | 1472 | 2.0E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 650 | 831 | 6.9E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1261 | 1495 | 18.300783 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 623 | 846 | 22.995972 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 309 | 589 | 35.921249 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 944 | 1214 | 35.525757 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 748 | 762 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 884 | 916 | - | - |
| Coils | Coil | Coil | 500 | 520 | - | - |
| Coils | Coil | Coil | 896 | 920 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_008778002.1 | ABC transporter C family member 5-like isoform X1 [Phoenix dactylifera] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8B9A5B9 | ABC transporter C family member 5-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103697840 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology