Basic Information
Locus ID:
gene-LOC103697650
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 13651717 | 13669900 | - | gene-LOC103697650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 80,501.49 Da | 47.91 | 65.96 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 333 | 356 | 8.5E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 368 | 394 | 3.2E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 289 | 313 | 2.7E-7 | IPR001876 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 594 | 685 | 6.1E-14 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 561 | 693 | 1.45E-35 | IPR016135 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 328 | 360 | 5.41E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 362 | 396 | 9.02E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 286 | 314 | 3.84E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 362 | 396 | 9.7E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 283 | 317 | 1.4E-13 | - |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 550 | 696 | 2.4E-40 | IPR016135 |
| Gene3D | G3DSA:4.10.1060.10 | - | 325 | 361 | 3.4E-13 | - |
| SMART | SM00547 | zf_4 | 368 | 392 | 8.7E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 335 | 359 | 4.8E-7 | IPR001876 |
| SMART | SM00212 | ubc_7 | 566 | 710 | 4.0E-11 | - |
| SMART | SM00547 | zf_4 | 291 | 315 | 1.3E-7 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 289 | 318 | 9.687219 | IPR001876 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 563 | 711 | 32.47488 | IPR000608 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 366 | 395 | 9.506543 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 333 | 362 | 9.675926 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 293 | 312 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 370 | 389 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 81 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.2 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_008777784.2 | zinc finger protein VAR3, chloroplastic [Phoenix dactylifera] | 0 |
| Q9CAB6 | Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana OX=3702 GN=UEV1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BJ25 | zinc finger protein VAR3, chloroplastic OS=Phoenix dactylifera OX=42345 GN=LOC103697650 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology