Basic Information
Locus ID:
gene-LOC103697619
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 7373292 | 7381784 | + | gene-LOC103697619 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.83 | 163,515.66 Da | 39.17 | 107.24 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1200 | 1420 | 4.89027E-121 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 887 | 1177 | 4.32009E-76 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 584 | 788 | 6.73069E-102 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 272 | 559 | 1.14181E-90 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 1219 | 1367 | 6.9E-28 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 610 | 740 | 3.8E-14 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 272 | 538 | 6.5E-21 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 904 | 1127 | 2.5E-25 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1195 | 1427 | 7.46E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 887 | 1184 | 1.44E-49 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 265 | 566 | 7.72E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 607 | 801 | 3.41E-48 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 850 | 1183 | 2.8E-55 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 598 | 824 | 1.4E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1185 | 1438 | 7.8E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 260 | 569 | 2.8E-44 | IPR036640 |
| SMART | SM00382 | AAA_5 | 614 | 788 | 2.1E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1228 | 1421 | 1.3E-8 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 271 | 551 | 31.051764 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1202 | 1436 | 16.906898 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 584 | 811 | 19.201138 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 889 | 1165 | 35.126465 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 713 | 727 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_008777748.2 | putative ABC transporter C family member 15 [Phoenix dactylifera] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BIJ4 | putative ABC transporter C family member 15 OS=Phoenix dactylifera OX=42345 GN=LOC103697619 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology