Basic Information
Locus ID:
gene-LOC103697443
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
MADS-box transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 7318227 | 7342216 | + | gene-LOC103697443 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 24,007.16 Da | 60.06 | 77.31 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 76 | 9.3886E-43 | IPR033896 |
| Pfam | PF01486 | K-box region | 81 | 168 | 6.0E-27 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 57 | 3.3E-26 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 80 | 1.7E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 92 | 1.2E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 3.5E-39 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 83 | 175 | 13.685946 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 30.809792 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 4.4E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 4.4E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 4.4E-29 | IPR002100 |
| Coils | Coil | Coil | 139 | 166 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_008777520.2 | MADS-box transcription factor 50-like isoform X1 [Phoenix dactylifera] | 0 |
| A2Z9Q7 | MADS-box transcription factor 56 OS=Oryza sativa subsp. indica OX=39946 GN=MADS56 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8B7BIP4 | MADS-box transcription factor 50-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103697443 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology