Basic Information
Locus ID:
gene-LOC103697088
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
LSM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 14557522 | 14563675 | + | gene-LOC103697088 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 13,855.72 Da | 93.48 | 84.36 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06168 | LSMD1 | 38 | 112 | 7.80224E-28 | IPR034110 |
| Pfam | PF01423 | LSM domain | 40 | 101 | 9.8E-9 | IPR001163 |
| SUPERFAMILY | SSF50182 | Sm-like ribonucleoproteins | 38 | 114 | 9.56E-14 | IPR010920 |
| Gene3D | G3DSA:2.30.30.100 | - | 38 | 115 | 6.3E-16 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18372.1 | Small nuclear ribonucleoprotein family protein. | 0 |
| RefSeq | XP_008777091.1 | uncharacterized protein LOC103697088 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B7BHR6 | uncharacterized protein LOC103697088 OS=Phoenix dactylifera OX=42345 GN=LOC103697088 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22277 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_954 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah005300, Ah012634 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g080410 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40575, Sbi_jg50603 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2162 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015979 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45143, Sgl49989 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007460, gene:ENSEOMG00000027912 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0004110, CQ.Regalona.r1.4BG0004290 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30094650 |
| Apiaceae | Apium graveolens | 1 | Ag7G00931 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697088 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2806.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G09120 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G18372.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026609m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g15690.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g072030.2N, BniB05g018080.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g15680 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0285s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g09030, gene.Thate04g01360 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.861 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00001016, Pov_00016280, Pov_00032542, Pov_00034291 |
| Poaceae | Echinochloa crus-galli | 2 | BH06.2487, CH06.2785 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0224810, gene-QOZ80_3BG0270100 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0735450.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_036035, gene-QYE76_059390 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g46390.1 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009730, Chr10G020290, Chr11G002340 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G782600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG064580, gene_TRIDC7BG057750 |
| Poaceae | Triticum aestivum | 2 | TraesCS7A02G462700.1.cds1, TraesCS7D02G450600.1.cds1 |
| Poaceae | Zea mays | 2 | Zm00001eb224700_P001, Zm00001eb273860_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40564, nbis-gene-9750 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30999, Zma_g33252 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1133 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g11180 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.830 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24993 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12980 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19202 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000022l.38 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16811 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10312 |
| Salicaceae | Populus euphratica | 1 | populus_peu29231 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609188 |
| Solanaceae | Solanum chilense | 2 | SOLCI001460100, SOLCI001984300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028702 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_10527, gene_16599 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1049 |
| Zosteraceae | Zostera marina | 1 | Zosma05g27620.v3.1 |