Basic Information
Locus ID:
gene-LOC103697077
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000090F | 1119517 | 1124472 | - | gene-LOC103697077 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 51,690.91 Da | 51.00 | 80.37 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 165 | 430 | 8.65958E-47 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 305 | 345 | 1.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 297 | 2.4E-6 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 181 | 238 | 1.1E-4 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 397 | 430 | 0.013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 147 | 431 | 1.79E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 90 | 433 | 2.9E-117 | IPR015943 |
| SMART | SM00320 | WD40_4 | 348 | 388 | 45.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 254 | 0.058 | IPR001680 |
| SMART | SM00320 | WD40_4 | 175 | 214 | 0.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 345 | 3.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 391 | 430 | 6.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 297 | 1.4E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 297 | 14.251289 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 297 | 11.787407 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 398 | 431 | 10.021053 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 398 | 431 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 182 | 223 | 9.472486 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_008777075.1 | cell division cycle 20.2, cofactor of APC complex-like [Phoenix dactylifera] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BHT3 | cell division cycle 20.2, cofactor of APC complex-like OS=Phoenix dactylifera OX=42345 GN=LOC103697077 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology