Basic Information
Locus ID:
gene-LOC103697068
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 3392057 | 3405389 | - | gene-LOC103697068 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 132,018.63 Da | 69.24 | 60.93 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 23 | 52 | 3.19534E-4 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 761 | 889 | 1.7451E-60 | - |
| Pfam | PF00397 | WW domain | 22 | 52 | 1.7E-6 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 773 | 880 | 1.3E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 566 | 736 | 5.6E-48 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 614 | 897 | 1.13E-73 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 17 | 55 | 3.77E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 517 | 750 | 5.9E-87 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 17 | 59 | 1.7E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 751 | 921 | 5.1E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 561 | 764 | 1.1E-65 | IPR014001 |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.1E-6 | IPR001202 |
| SMART | SM00490 | helicmild6 | 801 | 880 | 2.1E-32 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 542 | 570 | 10.80885 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 776 | 919 | 24.471169 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 573 | 747 | 31.19463 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.4475 | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 693 | 701 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 941 | 1114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1027 | 1065 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1130 | 1198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1092 | 1107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1150 | 1166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1001 | 1015 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_008777060.2 | LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 40 [Phoenix dactylifera] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7BHT0 | LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 40 OS=Phoenix dactylifera OX=42345 GN=LOC103697068 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology