Basic Information
Locus ID:
gene-LOC103697005
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 4956745 | 4966768 | - | gene-LOC103697005 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 72,788.12 Da | 45.40 | 81.21 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 442 | 575 | 2.1155E-61 | - |
| CDD | cd17920 | DEXHc_RecQ | 244 | 441 | 7.6219E-99 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 253 | 422 | 3.7E-17 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 578 | 647 | 9.5E-13 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 457 | 565 | 6.0E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 290 | 585 | 1.07E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 215 | 441 | 1.6E-83 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 442 | 649 | 7.1E-59 | IPR027417 |
| SMART | SM00487 | ultradead3 | 246 | 450 | 6.8E-30 | IPR014001 |
| SMART | SM00490 | helicmild6 | 484 | 566 | 1.5E-22 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 244 | 649 | 1.4E-152 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 258 | 434 | 22.103048 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 459 | 614 | 18.102516 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 373 | 382 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 180 | - | - |
| Coils | Coil | Coil | 24 | 44 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_038970970.1 | ATP-dependent DNA helicase Q-like 1 [Phoenix dactylifera] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B8ZA71 | ATP-dependent DNA helicase OS=Phoenix dactylifera OX=42345 GN=LOC103697005 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology