Basic Information
Locus ID:
gene-LOC103696813
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
rRNA N-glycosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 15010994 | 15012157 | + | gene-LOC103696813 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 31,541.04 Da | 57.80 | 72.90 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 19 | 202 | 7.2E-49 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 13 | 237 | 4.85E-54 | IPR036041 |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 184 | 261 | 2.9E-5 | IPR016139 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 163 | 8.3E-53 | IPR016138 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 18 | 31 | 9.6E-19 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 185 | 202 | 9.6E-19 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 153 | 173 | 9.6E-19 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 123 | 137 | 9.6E-19 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 65 | 80 | 9.6E-19 | IPR017989 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 276 | - | - |
| Coils | Coil | Coil | 245 | 270 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_008776754.2 | protein synthesis inhibitor II-like [Phoenix dactylifera] | 0 |
| P04399 | Protein synthesis inhibitor II OS=Hordeum vulgare OX=4513 GN=RIP30A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BHC2 | rRNA N-glycosylase OS=Phoenix dactylifera OX=42345 GN=LOC103696813 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology