Basic Information
Locus ID:
gene-LOC103696445
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 12271731 | 12312984 | + | gene-LOC103696445 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.34 | 62,381.02 Da | 62.11 | 60.64 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 135 | 263 | 1.39534E-59 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 20 | 110 | 1.1E-24 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 147 | 254 | 5.5E-32 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 19 | 270 | 2.44E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 11 | 124 | 1.9E-40 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 125 | 295 | 3.4E-56 | IPR027417 |
| SMART | SM00490 | helicmild6 | 175 | 254 | 5.3E-30 | IPR001650 |
| SMART | SM00487 | ultradead3 | 1 | 138 | 1.4E-5 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 150 | 293 | 23.729237 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 121 | 18.600967 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 67 | 75 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 534 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 534 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 461 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14610.3 | - | 0 |
| RefSeq | XP_038988529.1 | DEAD-box ATP-dependent RNA helicase 40-like [Phoenix dactylifera] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B9AYN3 | DEAD-box ATP-dependent RNA helicase 40-like OS=Phoenix dactylifera OX=42345 GN=LOC103696445 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology