Basic Information
Locus ID:
gene-LOC103696398
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
ALIX V-shaped domain binding to HIV
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 16644262 | 16660872 | + | gene-LOC103696398 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 93,553.77 Da | 56.24 | 81.68 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09238 | V_Alix_like_1 | 372 | 708 | 7.45523E-171 | - |
| CDD | cd09246 | BRO1_Alix_like_1 | 10 | 366 | 1.46977E-144 | - |
| Pfam | PF13949 | ALIX V-shaped domain binding to HIV | 425 | 710 | 6.0E-72 | IPR025304 |
| Pfam | PF03097 | BRO1-like domain | 10 | 390 | 2.1E-106 | IPR004328 |
| Gene3D | G3DSA:1.20.120.560 | alix/aip1 in complex with the ypdl late domain | 375 | 650 | 6.3E-70 | - |
| Gene3D | G3DSA:1.25.40.280 | alix/aip1 like domains | 7 | 371 | 1.2E-106 | IPR038499 |
| Gene3D | G3DSA:1.20.140.50 | alix/aip1 like domains | 418 | 699 | 6.3E-70 | - |
| SMART | SM01041 | BRO1_2 | 9 | 394 | 2.4E-111 | IPR004328 |
| ProSiteProfiles | PS51180 | BRO1 domain profile. | 9 | 411 | 46.63393 | IPR004328 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 739 | 755 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 777 | 841 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 730 | 761 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 814 | 829 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 777 | 792 | - | - |
| Coils | Coil | Coil | 446 | 476 | - | - |
| Coils | Coil | Coil | 573 | 593 | - | - |
| Coils | Coil | Coil | 659 | 679 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15130.1 | Endosomal targeting BRO1-like domain-containing protein. | 0 |
| RefSeq | XP_008776264.2 | vacuolar-sorting protein BRO1-like [Phoenix dactylifera] | 0 |
| F4HXZ1 | Vacuolar-sorting protein BRO1 OS=Arabidopsis thaliana OX=3702 GN=BRO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BGI1 | vacuolar-sorting protein BRO1-like OS=Phoenix dactylifera OX=42345 GN=LOC103696398 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34989, jg5208 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18544 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025429 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g079130, BVRB_6g142900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12893, Sbi_jg52977 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8880 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026027 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl32907, Sgl38229 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000021, gene:ENSEOMG00000000765 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0013030, CQ.Regalona.r1.6BG0013400 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30216170, pistato.v30216530 |
| Apiaceae | Apium graveolens | 1 | Ag5G01977 |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G009070, scaffold004352G000040 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696398, gene-LOC103719274 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1198.V1.1, AsparagusV1_10.913.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G27631, Ftri5G33241 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G15130.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006787m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g13470.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g026060.2N, BniB06g040470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G2080 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2279 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g11440, gene.Cymno10g06430 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0207s00011.v1.0, Dusal.0241s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g37890, gene.Thate08g14090 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1439 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023096, Pov_00026898 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G02060, Lb1G02864, Lb2G13273 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1716, BH01.1916, CH01.2022 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0112280, gene-QOZ80_2BG0165670 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0045890.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011767 |
| Poaceae | Oryza coarctata | 2 | Oco19G007010, Oco20G006950 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g67080.1, LOC_Os10g35250.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G189300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502737, Pt_Chr0502794 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G030300, Chr09G001820, Chr15G021650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G299700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG025150, gene_TRIDC1AG026670 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS1A02G164000.1, TraesCS1A02G174400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb044760_P001, Zm00001eb221160_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45316 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12684 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.778, evm.TU.LG21.455 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g05340, gene.Posoc06g16700 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.147, evm.TU.Scaffold_17_RagTag.855 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23566 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20465 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21995 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.475 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004436 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10868 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14185 |
| Salicaceae | Populus euphratica | 2 | populus_peu07131, populus_peu07132 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615978, gene-LOC132641649 |
| Solanaceae | Solanum chilense | 2 | SOLCI004454100, SOLCI005485900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107017929, gene-LOC107020598 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12753_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0685 |
| Zosteraceae | Zostera marina | 2 | Zosma03g29670.v3.1, Zosma06g22940.v3.1 |