Basic Information
Locus ID:
gene-LOC103696220
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 248443 | 262668 | + | gene-LOC103696220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 65,416.65 Da | 46.68 | 90.26 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 264 | 556 | 3.79349E-49 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 298 | 9.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 477 | 513 | 0.031 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 522 | 556 | 2.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 344 | 0.0072 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 258 | 556 | 3.92E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 253 | 521 | 2.4E-57 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 522 | 575 | 2.0E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 472 | 514 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 5.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 430 | 468 | 50.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 428 | 420.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 517 | 557 | 8.9E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 386 | 0.031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 260 | 299 | 6.1E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 524 | 559 | 11.65559 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 524 | 566 | 14.61889 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 8.345914 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 94 | 151 | 8.776918 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 348 | 10.864685 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 267 | 301 | 10.811958 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 308 | 13.449252 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 286 | 300 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 373 | 387 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 501 | 515 | 8.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 544 | 558 | 8.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 8.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_008775985.1 | WD repeat-containing protein 26 homolog [Phoenix dactylifera] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BG43 | WD repeat-containing protein 26 homolog OS=Phoenix dactylifera OX=42345 GN=LOC103696220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology