Basic Information
Locus ID:
gene-LOC103696195
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Belongs to the small GTPase superfamily. Arf family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 19303983 | 19314211 | - | gene-LOC103696195 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 34,614.72 Da | 43.63 | 93.07 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04105 | SR_beta | 106 | 305 | 3.28816E-67 | IPR019009 |
| Pfam | PF09439 | Signal recognition particle receptor beta subunit | 104 | 284 | 7.0E-38 | IPR019009 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 107 | 255 | 9.68E-24 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 101 | 307 | 3.1E-62 | IPR027417 |
| SMART | SM00177 | arf_sub_2 | 89 | 284 | 0.0082 | - |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 106 | 253 | 6.8E-13 | IPR005225 |
| ProSiteProfiles | PS51417 | small GTPase Arf family profile. | 99 | 309 | 8.881754 | - |
| Coils | Coil | Coil | 240 | 260 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05670.1 | signal recognition particle binding. | 0 |
| RefSeq | XP_038979539.1 | signal recognition particle receptor subunit beta-like isoform X1 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B9A8N6 | Signal recognition particle receptor subunit beta OS=Phoenix dactylifera OX=42345 GN=LOC103696195 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg7030, jg9479 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_19509, gene_3474 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000594 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g117280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30549, Sbi_jg58697 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28564 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00014931, GOSA_00027077 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55220, Sgl60469 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012318, gene:ENSEOMG00000034490 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0013760, CQ.Regalona.r1.8BG0015050 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30222060 |
| Apiaceae | Apium graveolens | 1 | Ag1G00054 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G010320, COCNU_10G007860 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696195, gene-LOC103710380 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.298.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G23817 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G18770.1, AT5G05670.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014432m.g.v1.0, Thhalv10022817m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g32260.v2.2, Sp6g37220.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g055030.2N, BniB03g067700.2N, BniB08g002330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1386 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1473 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g00120 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0283s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g22760 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1506 |
| Nitrariaceae | Nitraria sibirica | 6 | evm.TU.LG08.1150, evm.TU.LG08.1151, evm.TU.LG08.1152 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00026425, Pov_00039392 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G24062, Lb5G29478, Lb5G29479 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3356, AH08.1376, BH01.3708, BH08.1592, CH01.3941 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0667510.2, HORVU.MOREX.r3.7HG0682460.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_030170, gene-QYE76_030179 |
| Poaceae | Oryza coarctata | 2 | Oco15G010520, Oco16G012010 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g27870.1, LOC_Os08g41250.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G033700, gene-BS78_09G126800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0403702, Pt_Chr0403707 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G013620, Chr20G006820, Chr29G006500 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G355000, Tel7E01G451000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC7AG024070, gene_TRIDC7AG032990 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS4A02G461200.2, TraesCS7A02G193200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb042120_P001, Zm00001eb178650_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-1710, nbis-gene-4086, nbis-gene-57236 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1283, Zma_g4161 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.949, evm.TU.LG09.1019 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g21320 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.379 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9892 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2306, nbisL1-mrna-2307 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17980 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.749 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002860 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3253 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11236 |
| Salicaceae | Populus euphratica | 1 | populus_peu33010 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600468, gene-LOC132604540 |
| Solanaceae | Solanum chilense | 2 | SOLCI002514600, SOLCI007417500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004818, gene-LOC107015225 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10436 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2462 |
| Zosteraceae | Zostera marina | 2 | Zosma01g32130.v3.1, Zosma03g04200.v3.1 |