Basic Information
Locus ID:
gene-LOC103696097
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RNA polymerase II C-terminal domain phosphatase-like 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 16498842 | 16522687 | + | gene-LOC103696097 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 105,706.57 Da | 53.38 | 79.94 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 241 | 357 | 4.50109E-20 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 247 | 355 | 6.4E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 703 | 762 | 1.8E-5 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 835 | 909 | 9.28E-11 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 699 | 763 | 2.32E-11 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 126 | 362 | 7.42E-20 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 127 | 383 | 3.8E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 695 | 773 | 7.5E-8 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 833 | 921 | 3.4E-6 | - |
| SMART | SM00358 | DRBM_3 | 699 | 763 | 5.7E-9 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 835 | 903 | 1.6E-5 | IPR014720 |
| SMART | SM00577 | forpap2 | 192 | 366 | 1.0E-14 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 131 | 382 | 15.525204 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 698 | 764 | 11.285643 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 834 | 904 | 11.552683 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 934 | 953 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 939 | 953 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_026656919.2 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Phoenix dactylifera] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8J095 | protein-serine/threonine phosphatase OS=Phoenix dactylifera OX=42345 GN=LOC103696097 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology