Basic Information
Locus ID:
gene-LOC103696028
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 2965048 | 2972468 | + | gene-LOC103696028 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 35,538.66 Da | 37.12 | 81.07 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 48 | 107 | 2.8E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 38 | 119 | 3.8E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 42 | 115 | 1.7E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 46 | 115 | 2.9E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 45 | 119 | 10.752462 | IPR000504 |
| Coils | Coil | Coil | 268 | 288 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_038984585.1 | binding partner of ACD11 1-like isoform X1 [Phoenix dactylifera] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9ADQ6 | binding partner of ACD11 1-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103696028 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology