Basic Information
Locus ID:
gene-LOC103695548
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 14952573 | 14962699 | - | gene-LOC103695548 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 61,047.94 Da | 44.99 | 88.82 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 235 | 531 | 2.32264E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 453 | 488 | 0.027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 495 | 531 | 1.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 282 | 316 | 0.0022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 234 | 270 | 8.5E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 230 | 531 | 1.58E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 222 | 534 | 4.3E-63 | IPR015943 |
| SMART | SM00320 | WD40_4 | 405 | 443 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 363 | 403 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 492 | 532 | 9.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 447 | 489 | 0.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 361 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 232 | 271 | 3.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 277 | 316 | 2.4E-6 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 39 | 71 | 8.401037 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 284 | 320 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 499 | 531 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 284 | 325 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 239 | 273 | 8.729241 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 239 | 280 | 11.510997 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 499 | 531 | 11.708317 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_008775134.1 | WD repeat-containing protein WDS homolog isoform X1 [Phoenix dactylifera] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BEY2 | WD repeat-containing protein WDS homolog isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103695548 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology