Basic Information
Locus ID:
gene-BS78_K338100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Wall-associated receptor kinase galacturonan-binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_94 | 160043 | 171784 | + | gene-BS78_K338100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 81,532.57 Da | 47.24 | 86.41 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 349 | 392 | 2.76934E-6 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 50 | 81 | 4.8E-7 | IPR025287 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 468 | 731 | 3.0E-46 | IPR001245 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 346 | 399 | 1.82E-5 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 466 | 735 | 2.05E-66 | IPR011009 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 352 | 400 | 2.6E-8 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 541 | 740 | 7.1E-49 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 448 | 540 | 3.2E-22 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 310 | 351 | 5.3E-6 | - |
| SMART | SM00181 | egf_5 | 352 | 399 | 7.6E-4 | IPR000742 |
| SMART | SM00181 | egf_5 | 299 | 348 | 80.0 | IPR000742 |
| SMART | SM00179 | egfca_6 | 349 | 399 | 1.8E-9 | IPR001881 |
| SMART | SM00220 | serkin_6 | 465 | 733 | 3.3E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 465 | 733 | 34.901806 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 585 | 597 | - | IPR008271 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 374 | 385 | - | IPR000152 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 349 | 383 | - | IPR018097 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 471 | 493 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21250.1 | cell wall-associated kinase. cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides. | 0 |
| RefSeq | XP_039793966.1 | wall-associated receptor kinase 4-like [Panicum virgatum] | 0 |
| Q39191 | Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T0V8Y9 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2NG610800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology