Basic Information
Locus ID:
gene-BS78_K335000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_93 | 120020 | 120762 | - | gene-BS78_K335000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 23,066.75 Da | 29.84 | 77.11 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00314 | Thaumatin family | 123 | 169 | 9.4E-9 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 42 | 219 | 4.84E-36 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 114 | 221 | 4.4E-15 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 42 | 113 | 2.6E-8 | IPR037176 |
| SMART | SM00205 | tha2 | 43 | 219 | 2.4E-14 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 112 | 183 | 3.3E-11 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 170 | 231 | 0.0048 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 4 | 118 | 1.2E-7 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 97 | 219 | 13.684361 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 209 | 218 | 3.4E-5 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 124 | 140 | 3.4E-5 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 42 | 54 | 3.4E-5 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28790.1 | Pathogenesis-related thaumatin superfamily protein. | 0 |
| RefSeq | XP_004980057.3 | uncharacterized protein LOC101761990 [Setaria italica] | 0 |
| Q41350 | Osmotin-like protein OS=Solanum lycopersicum OX=4081 PE=1 SV=1 | 0 | |
| TrEMBL | A0A368SBD6 | Osmotin-like protein OS=Setaria italica OX=4555 GN=SETIT_8G248100v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH04.2288, AH06.711, BH04.2359, CH04.2700 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0693120, gene-QOZ80_9BG0718890 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0358550.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065465 |
| Poaceae | Oryza coarctata | 3 | Oco21G010080, Oco22G011390, Oco22G011400 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g47670.1, LOC_Os11g47680.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G264900, gene-BS78_05G282600, gene-BS78_K334800 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G013680, Chr0G006710, Chr26G000200, Chr31G008700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G222100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4AG028160 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G174300.1.cds1, TraesCS4B02G143200.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb047690_P001, Zm00001eb164710_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45970 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19156 |