Basic Information
Locus ID:
gene-BS78_K334800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_93 | 93819 | 94792 | - | gene-BS78_K334800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 25,191.09 Da | 35.27 | 72.62 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00314 | Thaumatin family | 47 | 191 | 6.9E-21 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 42 | 240 | 1.07E-40 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 40 | 241 | 1.1E-34 | IPR037176 |
| SMART | SM00205 | tha2 | 43 | 240 | 2.2E-16 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 195 | 251 | 0.066 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 2 | 199 | 1.4E-28 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 40 | 240 | 18.482065 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28790.1 | Pathogenesis-related thaumatin superfamily protein. | 0 |
| RefSeq | XP_039845556.1 | osmotin-like protein [Panicum virgatum] | 0 |
| Q41350 | Osmotin-like protein OS=Solanum lycopersicum OX=4081 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811QHC9 | Osmotin-like protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS39017 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH04.2288, AH06.711, BH04.2359, CH04.2700 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0693120, gene-QOZ80_9BG0718890 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0358550.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065465 |
| Poaceae | Oryza coarctata | 3 | Oco21G010080, Oco22G011390, Oco22G011400 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g47670.1, LOC_Os11g47680.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G264900, gene-BS78_05G282600, gene-BS78_K334800 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G013680, Chr0G006710, Chr26G000200, Chr31G008700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G222100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4AG028160 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G174300.1.cds1, TraesCS4B02G143200.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb047690_P001, Zm00001eb164710_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45970 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19156 |