Basic Information
Locus ID:
gene-BS78_K334200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_93 | 60474 | 61097 | - | gene-BS78_K334200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 21,861.36 Da | 67.57 | 74.54 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 155 | 197 | 2.50349E-16 | - |
| Pfam | PF13639 | Ring finger domain | 154 | 197 | 6.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 148 | 200 | 2.5E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 201 | 6.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 155 | 196 | 3.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 155 | 197 | 12.282736 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 130 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039822977.1 | E3 ubiquitin-protein ligase EL5-like [Panicum virgatum] | 0 |
| P0CH02 | Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B PE=3 SV=1 | 0 | |
| TrEMBL | A0A8T0PGW3 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_8NG307100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G284300, gene-BS78_K266900, gene-BS78_K267000 ... |