Basic Information
Locus ID:
gene-BS78_K312900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_80 | 88795 | 101444 | + | gene-BS78_K312900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 80,906.90 Da | 40.23 | 77.32 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 271 | 396 | 7.80874E-36 | IPR033734 |
| CDD | cd09612 | Jacalin | 424 | 564 | 9.07697E-33 | IPR033734 |
| CDD | cd09612 | Jacalin | 606 | 730 | 6.83046E-31 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 427 | 566 | 3.7E-17 | IPR001229 |
| Pfam | PF00069 | Protein kinase domain | 2 | 231 | 5.1E-38 | IPR000719 |
| Pfam | PF01419 | Jacalin-like lectin domain | 610 | 730 | 4.7E-17 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 276 | 398 | 5.1E-20 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 582 | 730 | 2.75E-34 | IPR036404 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 241 | 1.33E-48 | IPR011009 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 413 | 567 | 9.81E-35 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 251 | 398 | 2.49E-36 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 413 | 569 | 2.8E-38 | IPR036404 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 251 | 1.6E-54 | - |
| Gene3D | G3DSA:2.100.10.30 | - | 581 | 730 | 3.3E-38 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 252 | 400 | 1.4E-40 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 275 | 398 | 7.3E-6 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 466 | 567 | 0.0011 | IPR001229 |
| SMART | SM00220 | serkin_6 | 6 | 240 | 1.3E-10 | IPR000719 |
| SMART | SM00915 | Jacalin_2 | 594 | 731 | 2.8E-10 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 413 | 567 | 29.533041 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 251 | 398 | 28.013611 | IPR001229 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 240 | 29.446081 | IPR000719 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 581 | 731 | 26.541077 | IPR001229 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 87 | 99 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11350.1 | S-domain-1 13. | 0 |
| RefSeq | XP_015636618.1 | mannose/glucose-specific lectin isoform X2 [Oryza sativa Japonica Group] | 0 |
| P83304 | Mannose/glucose-specific lectin (Fragment) OS=Parkia platycephala OX=185447 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0P7W0 | Protein kinase domain-containing protein OS=Oryza rufipogon OX=4529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology