Basic Information
Locus ID:
gene-BS78_K296400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Protein of unknown function (DUF 659)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_702 | 49477 | 52630 | - | gene-BS78_K296400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 106,013.69 Da | 46.43 | 61.92 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05699 | hAT family C-terminal dimerisation region | 594 | 661 | 1.3E-10 | IPR008906 |
| Pfam | PF04937 | Protein of unknown function (DUF 659) | 222 | 373 | 4.8E-47 | IPR007021 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 244 | 663 | 3.41E-50 | IPR012337 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 752 | 877 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 864 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 752 | 775 | - | - |
| Coils | Coil | Coil | 229 | 249 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13020.1 | hAT transposon superfamily protein. | 0 |
| RefSeq | XP_039846554.1 | uncharacterized protein LOC120706050 isoform X1 [Panicum virgatum] | 0 |
| TrEMBL | A0A1D6LG92 | Uncharacterized protein OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d035391 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | BH01.4753, BH06.686, BH08.2468, BH08.2472, CH05.2087 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1BG0056120, gene-QOZ80_4BG0351070 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_048311, gene-QYE76_055843 |
| Poaceae | Paspalum vaginatum | 15 | gene-BS78_03G023900, gene-BS78_03G199100, gene-BS78_K224500 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr03G013220, Chr03G013230, Chr03G013240, Chr05G004880 ... |