Basic Information
Locus ID:
gene-BS78_K288500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_66 | 340730 | 342192 | - | gene-BS78_K288500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 34,009.83 Da | 27.19 | 96.06 | 0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 32 | 151 | 4.03103E-18 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 185 | 314 | 5.5E-16 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 183 | 313 | 5.07E-19 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 31 | 160 | 2.45E-25 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 29 | 155 | 3.7E-20 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 158 | 314 | 1.6E-27 | IPR011333 |
| SMART | SM00225 | BTB_4 | 185 | 316 | 5.8E-8 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 185 | 256 | 12.184743 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 30 | 151 | 12.106423 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03740.1 | BTB-POZ and MATH domain 4. | 0 |
| RefSeq | XP_039822900.1 | BTB/POZ and MATH domain-containing protein 2-like [Panicum virgatum] | 0 |
| Q9SRV1 | BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=BPM4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0PAI2 | BTB/POZ and MATH domain-containing protein 4 OS=Panicum virgatum OX=38727 GN=PVAP13_8NG339500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G214200, gene-BS78_K288500 |