Basic Information
Locus ID:
gene-BS78_K288000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Domain of unknown function (DUF4220)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_66 | 297347 | 301119 | - | gene-BS78_K288000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.55 | 100,797.78 Da | 44.32 | 98.43 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13968 | Domain of unknown function (DUF4220) | 66 | 441 | 7.7E-61 | IPR025315 |
| Pfam | PF04578 | Protein of unknown function, DUF594 | 737 | 788 | 8.4E-20 | IPR007658 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 849 | 872 | - | - |
| Coils | Coil | Coil | 586 | 609 | - | - |
| Coils | Coil | Coil | 826 | 846 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025828138.1 | uncharacterized protein LOC112903136 [Panicum hallii] | 0 |
| TrEMBL | A0A2T7CQD0 | DUF4220 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_8G230800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH04.443 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9AG0671370 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0093960.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_046376, gene-QYE76_064692, gene-QYE76_064712 |
| Poaceae | Oryza coarctata | 2 | Oco21G002200, Oco21G008550 |
| Poaceae | Oryza sativa | 6 | LOC_Os10g31290.1, LOC_Os11g06990.1, LOC_Os11g40340.1 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G074800, gene-BS78_K288000, gene-BS78_K313600 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702477 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr23G018960 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G662700, Tel7E01G209900 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG063390, gene_TRIDC1AG063420 ... |
| Poaceae | Triticum aestivum | 16 | TraesCS1A02G401400.1, TraesCS1A02G432100.1 ... |