Basic Information
Locus ID:
gene-BS78_K280400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Wall-associated receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_634 | 40378 | 47437 | - | gene-BS78_K280400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 86,184.51 Da | 41.26 | 82.40 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 343 | 373 | 2.13308E-5 | - |
| Pfam | PF07645 | Calcium-binding EGF domain | 343 | 373 | 1.4E-5 | IPR001881 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 467 | 733 | 5.9E-41 | IPR001245 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 54 | 121 | 1.9E-9 | IPR025287 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 343 | 377 | 1.99E-6 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 456 | 739 | 7.01E-65 | IPR011009 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 291 | 381 | 3.7E-9 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 431 | 543 | 3.6E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 544 | 752 | 1.0E-47 | - |
| SMART | SM00181 | egf_5 | 291 | 339 | 0.35 | IPR000742 |
| SMART | SM00220 | serkin_6 | 465 | 736 | 6.8E-34 | IPR000719 |
| SMART | SM00179 | egfca_6 | 343 | 386 | 6.9E-4 | IPR001881 |
| SMART | SM00181 | egf_5 | 346 | 386 | 34.0 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 465 | 741 | 34.407116 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 471 | 496 | - | IPR017441 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 343 | 368 | - | IPR018097 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 588 | 600 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 761 | 784 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 751 | 784 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21230.1 | wall associated kinase 5. encodes a wall-associated kinase | 0 |
| RefSeq | XP_012702453.2 | wall-associated receptor kinase 2 [Setaria italica] | 0 |
| Q9LMN7 | Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A368RJV4 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_6G094100v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9AG0688840 |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_05G248600, gene-BS78_05G248800, gene-BS78_K280400 ... |
| Poaceae | Zea mays | 1 | Zm00001eb262530_P001 |