Basic Information
Locus ID:
gene-BS78_K280100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
von Willebrand factor (vWF) type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_630 | 90458 | 100471 | - | gene-BS78_K280100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 80,748.78 Da | 37.16 | 80.22 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00198 | vWFA | 422 | 496 | 0.00463573 | - |
| CDD | cd00198 | vWFA | 621 | 694 | 0.00518707 | - |
| Pfam | PF00069 | Protein kinase domain | 18 | 294 | 7.5E-40 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 7 | 296 | 1.66E-55 | IPR011009 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 372 | 516 | 1.3E-5 | IPR036465 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 113 | 311 | 6.5E-41 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 91 | 1.6E-18 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 17 | 300 | 31.990202 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00960.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_044441165.1 | uncharacterized protein LOC123167388 [Triticum aestivum] | 0 |
| O23082 | Cysteine-rich receptor-like protein kinase 44 OS=Arabidopsis thaliana OX=3702 GN=CRK44 PE=3 SV=2 | 0 | |
| TrEMBL | A0A3B6TYA5 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH04.2110 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0095880.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_05G188400, gene-BS78_05G188600, gene-BS78_K280100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205824 |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G009600, Tel2E01G010800, Tel7E01G005600 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG000300, gene_TRIDC2BG000030 ... |
| Poaceae | Triticum aestivum | 13 | TraesCS2A02G003000.1, TraesCS2B02G000200.1 ... |