Basic Information
Locus ID:
gene-BS78_K267000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_573 | 51843 | 53649 | + | gene-BS78_K267000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 34,256.24 Da | 64.78 | 68.19 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 264 | 307 | 7.82767E-16 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 139 | 182 | 1.2844E-15 | - |
| Pfam | PF13639 | Ring finger domain | 140 | 182 | 2.3E-12 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 264 | 307 | 2.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 133 | 187 | 2.59E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 259 | 311 | 1.24E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 186 | 5.2E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 225 | 311 | 5.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 265 | 306 | 5.3E-5 | IPR001841 |
| SMART | SM00184 | ring_2 | 140 | 181 | 5.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 265 | 307 | 12.031935 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 140 | 182 | 13.241681 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 130 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20030.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039822977.1 | E3 ubiquitin-protein ligase EL5-like [Panicum virgatum] | 0 |
| Q9SL78 | Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1 | 0 | |
| TrEMBL | A0A835BJE2 | RING-type E3 ubiquitin transferase OS=Digitaria exilis OX=1010633 GN=HU200_034750 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G284300, gene-BS78_K266900, gene-BS78_K267000 ... |