Basic Information
Locus ID:
gene-BS78_K266900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_573 | 43879 | 44409 | + | gene-BS78_K266900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 18,302.52 Da | 64.89 | 80.06 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 117 | 159 | 1.6665E-16 | - |
| Pfam | PF13639 | Ring finger domain | 116 | 159 | 5.4E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 110 | 163 | 5.05E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 167 | 1.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 117 | 158 | 5.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 117 | 159 | 12.681067 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60966.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039822977.1 | E3 ubiquitin-protein ligase EL5-like [Panicum virgatum] | 0 |
| Q9SRM0 | RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0Q1R6 | RING-type E3 ubiquitin transferase (Fragment) OS=Panicum virgatum OX=38727 GN=PVAP13_8KG297501 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G284300, gene-BS78_K266900, gene-BS78_K267000 ... |